napari_dmc_brainmap.visualization package

Subpackages

• napari_dmc_brainmap.visualization.vis_plots package
  • Submodules
  • napari_dmc_brainmap.visualization.vis_plots.barplot_visualization module
    • BarplotVisualization
      • BarplotVisualization.calculate_plot()
      • BarplotVisualization.do_bar_plot()
  • napari_dmc_brainmap.visualization.vis_plots.brainsection_plotter module
    • BrainsectionPlotter
      • BrainsectionPlotter.calculate_heatmap()
      • BrainsectionPlotter.calculate_heatmap_difference()
      • BrainsectionPlotter.plot_brain_schematic()
      • BrainsectionPlotter.plot_brain_schematic_voronoi()
  • napari_dmc_brainmap.visualization.vis_plots.brainsection_visualization module
    • BrainsectionVisualization
      • BrainsectionVisualization.calculate_plot()
      • BrainsectionVisualization.do_plot()
  • napari_dmc_brainmap.visualization.vis_plots.heatmap_visualization module
    • HeatmapVisualization
      • HeatmapVisualization.calculate_plot()
      • HeatmapVisualization.do_plot()
  • Module contents
• napari_dmc_brainmap.visualization.vis_utils package
  • Submodules
  • napari_dmc_brainmap.visualization.vis_utils.gene_info_dialog module
    • GeneInfoDialog
      • GeneInfoDialog.get_gene_info()
      • GeneInfoDialog.select_file()
      • GeneInfoDialog.setup_ui()
  • napari_dmc_brainmap.visualization.vis_utils.visualization_utils module
    • get_ancestors()
    • get_descendants()
    • get_unique_folder()
    • match_lists()
    • resort_df()
  • Module contents

Submodules

napari_dmc_brainmap.visualization.visualization module

class napari_dmc_brainmap.visualization.visualization.VisualizationWidget(napari_viewer: Viewer)

Bases: QWidget

Main widget for handling visualization tasks, including barplot, heatmap, and brain section plots.

progress_brainsection

progress_heatmap

napari_dmc_brainmap.visualization.visualization.calculate_barplot(barplot_vis: BarplotVisualization) → DataFrame

Calculate data for barplot visualization in a background thread.

Parameters:

barplot_vis (BarplotVisualization) – Barplot visualization object.

Returns:

Dataframe containing the barplot data.

Return type:

pd.DataFrame

napari_dmc_brainmap.visualization.visualization.calculate_brainsection(brainsection_vis: BrainsectionVisualization, progress_brainsection: pyqtSignal) → List

Calculate data for brain section visualization in a background thread.

Parameters:

• brainsection_vis (BrainsectionVisualization) – Brainsection visualization object.

• progress_brainsection (Signal) – Signal to update progress.

Returns:

Calculated data for brain section plots.

Return type:

List

napari_dmc_brainmap.visualization.visualization.calculate_heatmap(heatmap_vis: HeatmapVisualization, progress_heatmap: pyqtSignal) → DataFrame

Calculate data for heatmap visualization in a background thread.

Parameters:

• heatmap_vis (HeatmapVisualization) – Heatmap visualization object.

• progress_heatmap (Signal) – Signal to update progress.

Returns:

Dataframe containing the heatmap data.

Return type:

pd.DataFrame

napari_dmc_brainmap.visualization.visualization.initialize_barplot_widget() → FunctionGui

Initialize the barplot widget with configuration options.

Returns:

Barplot widget.

Return type:

FunctionGui

napari_dmc_brainmap.visualization.visualization.initialize_brainsection_widget() → FunctionGui

Initialize the brain section widget with configuration options.

Returns:

Brain section widget.

Return type:

FunctionGui

napari_dmc_brainmap.visualization.visualization.initialize_header_widget() → FunctionGui

Initialize the header widget with input and save path options.

Returns:

Header widget.

Return type:

FunctionGui

napari_dmc_brainmap.visualization.visualization.initialize_heatmap_widget() → FunctionGui

Initialize the heatmap widget with configuration options.

Returns:

Heatmap widget.

Return type:

FunctionGui

Module contents